[Bigjob-users] Reg: An issue while running a test Bigjob
pradeep kumar Mantha
pradeepm66 at gmail.com
Thu Dec 8 13:16:28 CST 2011
Hi!
Could you please look at FAQ-13 on bigjob website.
*13. For error - saga.bad_parameter: SAGA(BadParameter): condor_job:
Adaptor supports 'condor' and 'condorg' URL schemes, 'pbspro' is not
supported.*
if PBSPro adaptors are used export PBS_HOME or if Torque adaptors are used
export TORQUE_HOME envionrnment variable to the corresponding scheduling
installation location. For ex:
$ which qsub
/usr/local/bin/qsub
$ export PBS_HOME=/usr/local
Please let me know if it doesn't work.
thanks
pradeep
On Thu, Dec 8, 2011 at 1:05 PM, Muralidhar Chouhan
<cmural1 at tigers.lsu.edu>wrote:
> Hi Pradeep,
>
> This time i tried using "Sierra". I tried to run the example code using
> different lrms_url, it shows following error.
>
> "saga.bad_parameter: SAGA(BadParameter): condor_job: Adaptor supports
> 'condor' and 'condorg' URL schemes, 'pbspro' is not supported."
>
> But it runs fine with "fork://localhost". please help.
>
> Thanks & Regards
> Muralidhar Chouhan
>
> On Wed, Nov 30, 2011 at 2:51 PM, pradeep kumar Mantha <
> pradeepm66 at gmail.com> wrote:
>
>> Hi Murali!
>>
>> Could you please try to use other futuregrid machines like india or
>> sierra for running bigjob, as ALAMO has few problems accessing advert
>> database from compute nodes.
>>
>> thanks
>> pradeep.
>>
>>
>> On Sun, Nov 27, 2011 at 12:53 PM, Muralidhar Chouhan <
>> cmural1 at tigers.lsu.edu> wrote:
>>
>>> thanks a lot for the support.
>>>
>>> i tried to use other resources , it shows following error.
>>>
>>> "saga.bad_parameter: SAGA(BadParameter): condor_job: Adaptor supports
>>> 'condor' and 'condorg' URL schemes, 'pbspro' is not supported."
>>>
>>>
>>> On Sun, Nov 27, 2011 at 12:39 PM, pradeep kumar Mantha <
>>> pradeepm66 at gmail.com> wrote:
>>>
>>>> Yes everything looks fine and the job executed successfully.
>>>> Try using different resource urls given in the example to execute jobs
>>>> as per your requirement.
>>>>
>>>> Please let us know if something is not clear.
>>>>
>>>> On Sun, Nov 27, 2011 at 12:33 PM, Muralidhar Chouhan <
>>>> cmural1 at tigers.lsu.edu> wrote:
>>>>
>>>>> I have run the job, find the screen shot of my output.please suggest
>>>>> if i am still missing something.
>>>>>
>>>>>
>>>>> On Sun, Nov 27, 2011 at 12:19 PM, pradeep kumar Mantha <
>>>>> pradeepm66 at gmail.com> wrote:
>>>>>
>>>>>> Yes.
>>>>>> In $HOME directory just create link with name .saga.ini
>>>>>> ln -s $HOME/saga_adaptors/saga.ini .saga.ini
>>>>>>
>>>>>>
>>>>>> On Sun, Nov 27, 2011 at 12:11 PM, Muralidhar Chouhan <
>>>>>> cmural1 at tigers.lsu.edu> wrote:
>>>>>>
>>>>>>> I cant see it in my $HOME directory, there is no hidden file with
>>>>>>> name *.saga.ini (*i have used *ls -a* to see all the hidden files)
>>>>>>>
>>>>>>>
>>>>>>> On Sun, Nov 27, 2011 at 12:05 PM, pradeep kumar Mantha <
>>>>>>> pradeepm66 at gmail.com> wrote:
>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> On Sun, Nov 27, 2011 at 11:45 AM, Muralidhar Chouhan <
>>>>>>>> cmural1 at tigers.lsu.edu> wrote:
>>>>>>>>
>>>>>>>>> I can see the file mentioned in the following path,
>>>>>>>>>
>>>>>>>>> $HOME/saga_adaptors/saga.ini
>>>>>>>>>
>>>>>>>>
>>>>>>>> I think you created the file in $HOME/saga_adaptors with filename
>>>>>>>> saga.ini
>>>>>>>>
>>>>>>>> The file should be in $HOME directory and name of the file is
>>>>>>>> ".saga.ini" ( .saga.ini is a hidden file and starts with "." )
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>> i have modified the file as mentioned, however i did not change
>>>>>>>>> the *location, *i am not sure if i can copy paste the one that
>>>>>>>>> you shared, please confirm. It did not work for me. please find the
>>>>>>>>> attachments of my* saga.ini* file and the *source code*.
>>>>>>>>>
>>>>>>>>> (location in my file)
>>>>>>>>> location = ${SAGA_LOCATION:/N/soft/SAGA/saga/1.6/gcc-4.1.2}
>>>>>>>>>
>>>>>>>>> I have got below error this time,
>>>>>>>>>
>>>>>>>>> pilot_dir = saga.advert.directory(saga.url(pilot_url),
>>>>>>>>> saga.advert.Create | saga.advert.CreateParents | saga.advert.ReadWrite)
>>>>>>>>> saga.no_success: SAGA(NoSuccess): default_advert: Unable to
>>>>>>>>> establish connection to database_connection: dbname='advertdb' host='
>>>>>>>>> advert.cct.lsu.edu' password='<password>' port='8080'
>>>>>>>>> user='<username>' Cannot establish connection to the database: FATAL:
>>>>>>>>> password authentication failed for user "<username>"
>>>>>>>>>
>>>>>>>>>
>>>>>>>> Please use examples under tutorial section with corresponding
>>>>>>>> COORDINATION_URL. see FAQ 12.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>>>
>>>>>>>>> Thanks & Regards,
>>>>>>>>> Muralidhar Chouhan
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Sun, Nov 27, 2011 at 10:08 AM, pradeep kumar Mantha <
>>>>>>>>> pradeepm66 at gmail.com> wrote:
>>>>>>>>>
>>>>>>>>>> Currently!
>>>>>>>>>>
>>>>>>>>>> test-bigjob doesn't work on alamo since SAGA CSA installation was
>>>>>>>>>> not built with default sqlite3 database. So please use examples under
>>>>>>>>>> tutorial tab on bigjob page.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> Could you please try to use advert.cct.lsu.edu as hostname &
>>>>>>>>>> 8080 as port.
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> Note:
>>>>>>>>>>
>>>>>>>>>> Make sure you have file $HOME/.saga.ini
>>>>>>>>>> with content
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> [saga]
>>>>>>>>>> # saga install root, points to what is set in the environment, as
>>>>>>>>>> # SAGA_LOCATION, or use the configure time prefix as fallback.
>>>>>>>>>> location = ${SAGA_LOCATION:/var/tmp/saga-1.4.1_python2.6.4}
>>>>>>>>>>
>>>>>>>>>> # where to find adaptor ini files
>>>>>>>>>> ini_path = ${HOME}/saga_adaptors/
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> Hope it works.
>>>>>>>>>>
>>>>>>>>>> thanks
>>>>>>>>>> pradeep
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Sun, Nov 27, 2011 at 12:11 AM, Muralidhar Chouhan <
>>>>>>>>>> cmural1 at tigers.lsu.edu> wrote:
>>>>>>>>>>
>>>>>>>>>>> Dear Pradeep,
>>>>>>>>>>>
>>>>>>>>>>> I have tried the fix mentioned in the website, even then it
>>>>>>>>>>> gives me same error. Please confirm if the *host *parameter in
>>>>>>>>>>> the below line needs to be unchanged? please find the attachment of my
>>>>>>>>>>> *saga_adaptor_default_advert.ini *file.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> dbconnect = dbname=advertdb;host=<your hostname here>;port=5432;user=SAGA;password=SAGA_client
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> *Regards,*
>>>>>>>>>>> Muralidhar Chouhan
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> On Sat, Nov 26, 2011 at 11:31 PM, Ole Weidner <
>>>>>>>>>>> oweidner at cct.lsu.edu> wrote:
>>>>>>>>>>>
>>>>>>>>>>>> Hi,
>>>>>>>>>>>>
>>>>>>>>>>>> I don't see how http://faust.cct.lsu.edu/trac/bigjob/wiki/cewould help in this case. Frankly, I don't understand the "fix" at all.
>>>>>>>>>>>> There's no explanatio. Also, please note the subtile difference between
>>>>>>>>>>>> Muralidhar's problem:
>>>>>>>>>>>>
>>>>>>>>>>>> Unable to establish connection to database_connection:
>>>>>>>>>>>> dbname='advertdb' host='*localhost*' password='<password>'
>>>>>>>>>>>> port='*5432*' user='<username>'
>>>>>>>>>>>>
>>>>>>>>>>>> and the one in the FAQ section:
>>>>>>>>>>>>
>>>>>>>>>>>> Unable to establish connection to database_connection:
>>>>>>>>>>>> dbname='advertdb' host='*advert.cct.lsu.edu*'
>>>>>>>>>>>> password='<password>' port='*8080*' user='<username>'
>>>>>>>>>>>>
>>>>>>>>>>>> IMHO the role of the advert service is not made very clear in
>>>>>>>>>>>> the BigJob documentation and could easily become a stumbling block for the
>>>>>>>>>>>> casual BigJob user without any SAGA experience. In general, I think that
>>>>>>>>>>>> this needs to be addressed one way (replacing advert with something else)
>>>>>>>>>>>> or the other (make it more transparent to the user) in order to make BigJob
>>>>>>>>>>>> more user-friendly. I think the '*legendary*' HECToR project
>>>>>>>>>>>> made the same suggestion a while ago ;-)
>>>>>>>>>>>>
>>>>>>>>>>>> Cheers,
>>>>>>>>>>>> Ole
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> On Nov 26, 2011, at 10:52 PM, pradeep kumar Mantha wrote:
>>>>>>>>>>>>
>>>>>>>>>>>> Hi!
>>>>>>>>>>>>
>>>>>>>>>>>> Please find the solution at FAQ's & mailing list->common
>>>>>>>>>>>> errors on bigjob [ http://faust.cct.lsu.edu/trac/bigjob/]
>>>>>>>>>>>> website.
>>>>>>>>>>>>
>>>>>>>>>>>> Please let me know if it doesn't work.
>>>>>>>>>>>>
>>>>>>>>>>>> thanks
>>>>>>>>>>>> pradeep
>>>>>>>>>>>>
>>>>>>>>>>>> On Sat, Nov 26, 2011 at 9:38 PM, Muralidhar Chouhan <
>>>>>>>>>>>> cmural1 at tigers.lsu.edu> wrote:
>>>>>>>>>>>>
>>>>>>>>>>>>> Dear bigjob-users,
>>>>>>>>>>>>>
>>>>>>>>>>>>> I have installed the Bigjob on Futuregrid (alamo), but i am
>>>>>>>>>>>>> facing issues while running any test jobs on the machine. I have tested the
>>>>>>>>>>>>> successful installation of SAGA and Bigjob by running the following two
>>>>>>>>>>>>> lines in the python shell.
>>>>>>>>>>>>>
>>>>>>>>>>>>> import saga
>>>>>>>>>>>>> import bigjob
>>>>>>>>>>>>>
>>>>>>>>>>>>> There is a *test-bigjob *mentioned in the installation guide,
>>>>>>>>>>>>> i tried to run the same. It shows following error.
>>>>>>>>>>>>>
>>>>>>>>>>>>> "pilot_dir = saga.advert.directory(saga.url(pilot_url),
>>>>>>>>>>>>> saga.advert.Create | saga.advert.CreateParents | saga.advert.ReadWrite)
>>>>>>>>>>>>> saga.no_success: SAGA(NoSuccess): default_advert: Unable to
>>>>>>>>>>>>> establish connection to database_connection: dbname='advertdb'
>>>>>>>>>>>>> host='localhost' password='<password>' port='5432' user='<username>' Cannot
>>>>>>>>>>>>> establish connection to the database: could not connect to server:
>>>>>>>>>>>>> Connection refused
>>>>>>>>>>>>> Is the server running on host "localhost" and accepting
>>>>>>>>>>>>> TCP/IP connections on port 5432?"
>>>>>>>>>>>>>
>>>>>>>>>>>>> Please find the attachment of the text file containing the
>>>>>>>>>>>>> entire error output.please help.
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>>> *Sincerely,*
>>>>>>>>>>>>> Muralidhar Chouhan
>>>>>>>>>>>>>
>>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>>> Bigjob-users mailing list
>>>>>>>>>>>>> Bigjob-users at mail.cct.lsu.edu
>>>>>>>>>>>>> https://mail.cct.lsu.edu/mailman/listinfo/bigjob-users
>>>>>>>>>>>>>
>>>>>>>>>>>>>
>>>>>>>>>>>> _______________________________________________
>>>>>>>>>>>> Bigjob-users mailing list
>>>>>>>>>>>> Bigjob-users at mail.cct.lsu.edu
>>>>>>>>>>>> https://mail.cct.lsu.edu/mailman/listinfo/bigjob-users
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>> _______________________________________________
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>>>>>>>>>>>>
>>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> _______________________________________________
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>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
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