[Bigjob-users] (Many) Problems Running BigJob via GRAM

[Ole Weidner]

When I use pbs-ssh://qb1.loni.org (which should trigger BigJob's internal 'pbs-ss' mechanism?), I get the following error message:

01/22/2012 10:37:11 PM - bigjob - DEBUG - BJ Working Directory: /home/oweidner/agent/bj-880fb486-4573-11e1-bf9c-bc305b7ee8dc
01/22/2012 10:37:11 PM - bigjob - DEBUG - Adaptor specific modifications: pbs-ssh
01/22/2012 10:37:11 PM - bigjob - DEBUG - Escape SSH
...
qsub_file.close()
os.system( \"qsub  \" + qsub_file_name)
"
use standard proxy
Traceback (most recent call last):
...
  SAGA(BadParameter): condor_job: condor_job_adaptor.hpp(126): Adaptor supports 'condor' and 'condorg' URL schemes, 'ssh' is not supported.
  SAGA(NoSuccess): default_job: posix_job_service.cpp(70): Could not initialize job service for [ssh://qb1.loni.org/]. Only 'localhost' and engage-submit3.renci.org are supported.
  SAGA(NoSuccess): globus_gram_job: globus_gram_job_adaptor_service.cpp(46): Could not initialize job service for ssh://qb1.loni.org/. Only gram:// schemes are supported.
  SAGA(NoSuccess): proxy.cpp(261): No adaptor succeeded in executing constructor for job_service_cpi

It seems that BigJob still tries to use SAGA even though I specified pbs-ssh?!? 

Cheers
Ole

On Jan 22, 2012, at 9:32 PM, Ole Weidner wrote:

> When I use gram://qb1.loni.org/jobmanager-pbs instead of fork, I get the following error in the logs:
> 
> -bash-3.00$ cat stderr-bigjob_agent.txt
>  File "<string>", line 8
>    BIGJOB_AGENT_DIR= os.path.join(home, .bigjob)
>                                         ^
> SyntaxError: invalid syntax
> 
> It seems that some 'escaping' mechanism in BigJob removed the quotation marks ?!?
> 
> Cheers
> Ole
> 
> 
> On Jan 22, 2012, at 8:57 PM, Ole Weidner wrote:
> 
>> I'm usinggram://qb1.loni.org/jobmanager-fork
> 
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