[Saga-devel] saga-projects SVN commit 837: /papers/tg08/

Sat Jan 10 18:28:43 CST 2009

User: yye00
Date: 2009/01/10 06:28 PM

Modified:
 /papers/tg08/
  saga_icac09.tex, saga_tg08.aux, saga_tg08.log, saga_tg08.pdf

Log:
 Adding the map and the small paragraph Shantenu asked for

File Changes:

Directory: /papers/tg08/
========================

File [modified]: saga_icac09.tex
Delta lines: +22 -2
===================================================================

--- papers/tg08/saga_icac09.tex	2009-01-10 11:25:59 UTC (rev 836)
+++ papers/tg08/saga_icac09.tex	2009-01-11 00:28:41 UTC (rev 837)
@@ -28,6 +28,7 @@
 
 \newcommand{\fixme}[1]{ { \bf{ ***FIXME: #1 }} }
 \newcommand{\jhanote}[1]{ {\textcolor{red} { ***Jha: #1 }}}
+\newcommand{\yyenote}[1]{ {\textcolor{blue} { ***yye00: #1 }}}
 %\newcommand{\jhanote}[0]{}
 \newcommand{\jitter}[1]{{$\sigma(\alpha)$}}
 
@@ -774,9 +775,17 @@
 \subsection{ResourceMap Thorn}
 The ResourceMap thorn maps the various models to available resources.
 Each reservoir model has its own parameters that influence the size of
-the model and the wall time it will need to finish. \jhanote{In the
+the model and the wall time it will need to finish. Estimates of the required
+wall time and memory footprint of the simulation are obtained from
+benchmarks that mimic the actual models. A simple estimate
+is constructed based on the number of iterations the model will run for
+and other parameters such as the size of the domain, the IO frequency etc...
+The ResourceMap thorn needs to pass this information to BQP to obtain the 
+"confidence" factor for its predictions.
+ \jhanote{In the
   previous line, we need a set of clarifying remarks about how this is
-  derived. Does this help?}. The ResourceMap thorn queries the BQP
+  derived. Does this help?}.
+The ResourceMap thorn queries the BQP
 thorn for the best machine and queue combination that will start the
 model earliest at a high enough confidence (i.e above a specified
 threshold). This is done by iterating over a list of machines and
@@ -1034,6 +1043,17 @@
 \item{Hitting /scratch or /home too often (because of checkpointing), leading to very low access speeds and exceeding the requested wall clock time}
 \end{itemize}
 
+\subsection{Needs to be Moved}
+One of the recent improvements in deployment is the use of the
+python bindings to the FAUST project \yyenote{I think the name here should change
+as this is not really FAUST yet but loosely labelled FAUST}. Using
+these scripts, a user-specified number of stages each containing
+a user-defined number of models can be launched to the grid. As the
+models of a given stage run to completion, a second set of error-checking
+jobs are launched that ensure all the models ran to completion before
+the Kalman gain calculation is performed. This error-checking mechanism
+attempts to re-submit the failed jobs, and if met with failure a second time, 
+the stage is halted to allow for user intervention. \yyenote{that is what I am implementing at the moment} 
 
 
 \section{Results and Discussion}

File [modified]: saga_tg08.aux
Delta lines: +13 -7
===================================================================
--- papers/tg08/saga_tg08.aux	2009-01-10 11:25:59 UTC (rev 836)
+++ papers/tg08/saga_tg08.aux	2009-01-11 00:28:41 UTC (rev 837)
@@ -18,6 +18,7 @@
 \citation{KalmanPaper}
 \citation{gridsat03}
 \citation{majority_voting}
+\citation{cactusworm}
 \citation{apples03}
 \citation{apples03}
 \@writefile{toc}{\contentsline {section}{\numberline {I}Introduction}{1}{section.1}}
@@ -27,11 +28,16 @@
 \citation{bqp_url}
 \citation{DataAssim}
 \citation{KalmanPaper}
+\citation{LiEnKF07}
+\citation{DO2007}
+\citation{DO2006}
+\citation{DataAssim}
+\citation{KalmanPaper}
 \citation{escience07}
+\@writefile{lof}{\contentsline {figure}{\numberline {1}{\ignorespaces Schematic illustrating the irregular execution or hard-to-predict run-time characteristics of a prototype implementation of an ensemble kalman filter. The end-to-end application consists of several stages; in general at each stage the number of models generated varies. In the specific case studied in this paper, the size and granularity of the models varied within a stage. Consequently for any given stage the resource requirements varied from 8 processors to 64 processors. The run time of each model was unpredictable and uncorrelated with the run-time of models on running on the same number of processors -- a truly independent variable. At every stage, each model must converge to within a specified value before the next stage can begin, hence dynamically load-balancing so as to ensure that all models complete as close to each other as possible is the desired aim.}}{3}{figure.1}}
+\newlabel{fig:irregular_execution}{{1}{3}{Motivation: Ensemble Kalman Filters\relax }{figure.1}{}}
 \@writefile{toc}{\contentsline {section}{\numberline {II}Application: Description and Motivation}{3}{section.2}}
 \@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {II-A}}Motivation: Ensemble Kalman Filters}{3}{subsection.2.1}}
-\@writefile{lof}{\contentsline {figure}{\numberline {1}{\ignorespaces Schematic illustrating the irregular execution or hard-to-predict run-time characteristics of a prototype implementation of an ensemble kalman filter. The end-to-end application consists of several stages; in general at each stage the number of models generated varies. In the specific case studied in this paper, the size and granularity of the models varied within a stage. Consequently for any given stage the resource requirements varied from 8 processors to 64 processors. The run time of each model was unpredictable and uncorrelated with the run-time of models on running on the same number of processors -- a truly independent variable. At every stage, each model must converge to within a specified value before the next stage can begin, hence dynamically load-balancing so as to ensure that all models complete as close to each other as possible is the desired aim.}}{3}{figure.1}}
-\newlabel{fig:irregular_execution}{{1}{3}{Motivation: Ensemble Kalman Filters\relax }{figure.1}{}}
 \@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {II-B}}Application Outline}{3}{subsection.2.2}}
 \citation{ogf_web}
 \citation{saga-core}
@@ -56,9 +62,8 @@
 \@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {III-B}}BQP Thorn}{5}{subsection.3.2}}
 \@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {III-C}}ResourceMap Thorn}{5}{subsection.3.3}}
 \@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {III-D}}Submit Thorn}{5}{subsection.3.4}}
-\@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {III-E}}PerfMatrix}{5}{subsection.3.5}}
 \citation{google_maps}
-\@writefile{toc}{\contentsline {subsubsection}{\numberline {\unhbox \voidb at x \hbox {III-E}1}Advert-service database}{6}{subsubsection.3.5.1}}
+\@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {III-E}}PerfMatrix}{6}{subsection.3.5}}
 \@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {III-F}}Control Flow}{6}{subsection.3.6}}
 \@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {III-G}}Interfacing with Google Maps}{6}{subsection.3.7}}
 \@writefile{lof}{\contentsline {figure}{\numberline {3}{\ignorespaces A high-level overview of the control flow for the SAGA-Cactus based ensemble Kalman filter application. Models are generated and these are mapped to appropriate resources. This is done based upon the number of grid points in the model (which in turn determines the number of processors and memory) and the projected run-time (which is based upon estimated number of iterations). To a first approximation the data from BQP is utilized to determine the optimal resource -- defined as that resource with the highest chances of finishing a job with the prescribed characteristics (number of processors, duration) first. Obviously this is just a best effort guesstimate, as the actual run-time (number of iterations) is difficult to get correct (as it depends upon convergence to a value). After all models (n instances) in a given stage have finished there is a global synchronization point which in turn is the basis for providing models for the next stage (m iterations).}}{6}{figure.3}}
@@ -69,6 +74,7 @@
 \@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {IV-A}}Infrastructure}{7}{subsection.4.1}}
 \@writefile{toc}{\contentsline {subsection}{\numberline {\unhbox \voidb at x \hbox {IV-B}}Deployment}{7}{subsection.4.2}}
 \@writefile{toc}{\contentsline {section}{\numberline {V}Results and Discussion}{7}{section.5}}
+\citation{DO2007}
 \citation{gin_paper}
 \citation{nature99}
 \bibstyle{IEEEtran}
@@ -92,11 +98,11 @@
 \bibcite{saga_web}{17}
 \bibcite{cactus_web}{18}
 \bibcite{X0}{19}
+\@writefile{toc}{\contentsline {section}{\numberline {VI}Future Work and Conclusion}{8}{section.6}}
+\@writefile{toc}{\contentsline {section}{\numberline {VII}Acknowledgements}{8}{section.7}}
+\@writefile{toc}{\contentsline {section}{References}{8}{section*.2}}
 \bibcite{netperf_web}{20}
 \bibcite{PETSc}{21}
 \bibcite{google_maps}{22}
 \bibcite{gin_paper}{23}
 \bibcite{nature99}{24}
-\@writefile{toc}{\contentsline {section}{\numberline {VI}Future Work and Conclusion}{8}{section.6}}
-\@writefile{toc}{\contentsline {section}{\numberline {VII}Acknowledgements}{8}{section.7}}
-\@writefile{toc}{\contentsline {section}{References}{8}{section*.1}}

File [modified]: saga_tg08.log
Delta lines: +175 -154
===================================================================
--- papers/tg08/saga_tg08.log	2009-01-10 11:25:59 UTC (rev 836)
+++ papers/tg08/saga_tg08.log	2009-01-11 00:28:41 UTC (rev 837)
@@ -1,13 +1,16 @@
-This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4) (format=pdflatex 2008.2.26)  5 MAY 2008 11:08
+This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) (format=pdflatex 2008.12.6)  19 DEC 2008 15:08
 entering extended mode
+ %&-line parsing enabled.
 **saga_tg08.tex
 (./saga_tg08.tex
-LaTeX2e <2003/12/01>
-Babel <v3.8d> and hyphenation patterns for american, french, german, ngerman, b
-ahasa, basque, bulgarian, catalan, croatian, czech, danish, dutch, esperanto, e
-stonian, finnish, greek, icelandic, irish, italian, latin, magyar, norsk, polis
-h, portuges, romanian, russian, serbian, slovak, slovene, spanish, swedish, tur
-kish, ukrainian, nohyphenation, loaded.
+LaTeX2e <2005/12/01>
+Babel <v3.8h> and hyphenation patterns for english, usenglishmax, dumylang, noh
+yphenation, arabic, basque, bulgarian, coptic, welsh, czech, slovak, german, ng
+erman, danish, esperanto, spanish, catalan, galician, estonian, farsi, finnish,
+ french, greek, monogreek, ancientgreek, croatian, hungarian, interlingua, ibyc
+us, indonesian, icelandic, italian, latin, mongolian, dutch, norsk, polish, por
+tuguese, pinyin, romanian, russian, slovenian, uppersorbian, serbian, swedish, 
+turkish, ukenglish, ukrainian, loaded.
 (/usr/share/texmf/tex/latex/IEEEtran/IEEEtran.cls
 Document Class: IEEEtran 2007/03/05 V1.7a by Michael Shell
 -- See the "IEEEtran_HOWTO" manual for usage information.
@@ -100,18 +103,18 @@
 \KV at toks@=\toks15
 )
 (/usr/share/texmf/tex/latex/graphics/graphics.sty
-Package: graphics 2001/07/07 v1.0n Standard LaTeX Graphics (DPC,SPQR)
+Package: graphics 2006/02/20 v1.0o Standard LaTeX Graphics (DPC,SPQR)
 
 (/usr/share/texmf/tex/latex/graphics/trig.sty
 Package: trig 1999/03/16 v1.09 sin cos tan (DPC)
 )
-(/usr/share/texmf/tex/latex/graphics/graphics.cfg
-File: graphics.cfg 2005/02/03 v1.3 graphics configuration of teTeX/TeXLive
+(/usr/share/texmf/tex/latex/config/graphics.cfg
+File: graphics.cfg 2007/01/18 v1.5 graphics configuration of teTeX/TeXLive
 )
-Package graphics Info: Driver file: pdftex.def on input line 80.
+Package graphics Info: Driver file: pdftex.def on input line 90.
 
-(/usr/share/texmf/tex/latex/graphics/pdftex.def
-File: pdftex.def 2002/06/19 v0.03k graphics/color for pdftex
+(/usr/share/texmf/tex/latex/pdftex-def/pdftex.def
+File: pdftex.def 2007/01/08 v0.04d Graphics/color for pdfTeX
 \Gread at gobject=\count91
 ))
 \Gin at req@height=\dimen117
@@ -123,7 +126,7 @@
 \epsfysize=\dimen120
 )
 (/usr/share/texmf/tex/latex/subfigure/subfigure.sty
-Package: subfigure 2002/07/30 v2.1.4 subfigure package
+Package: subfigure 2002/03/15 v2.1.5 subfigure package
 \subfigtopskip=\skip44
 \subfigcapskip=\skip45
 \subfigcaptopadj=\dimen121
@@ -143,61 +146,66 @@
 \subfig at bottom=\skip49
 )
 (/usr/share/texmf/tex/latex/hyperref/hyperref.sty
-Package: hyperref 2003/11/30 v6.74m Hypertext links for LaTeX
+Package: hyperref 2007/02/07 v6.75r Hypertext links for LaTeX
 \@linkdim=\dimen123
 \Hy at linkcounter=\count96
 \Hy at pagecounter=\count97
 
 (/usr/share/texmf/tex/latex/hyperref/pd1enc.def
-File: pd1enc.def 2003/11/30 v6.74m Hyperref: PDFDocEncoding definition (HO)
+File: pd1enc.def 2007/02/07 v6.75r Hyperref: PDFDocEncoding definition (HO)
 )
-(/usr/share/texmf/tex/latex/hyperref/hyperref.cfg
-File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive and teTeX
+(/usr/share/texmf/tex/latex/config/hyperref.cfg
+File: hyperref.cfg 2002/06/06 v1.2 hyperref configuration of TeXLive
 )
-Package hyperref Info: Option `draft' set `true' on input line 1830.
-Package hyperref Info: Hyper figures OFF on input line 1880.
-Package hyperref Info: Link nesting OFF on input line 1885.
-Package hyperref Info: Hyper index ON on input line 1888.
-Package hyperref Info: Plain pages ON on input line 1893.
-Package hyperref Info: Backreferencing OFF on input line 1900.
+(/usr/share/texmf/tex/latex/oberdiek/kvoptions.sty
+Package: kvoptions 2006/08/22 v2.4 Connects package keyval with LaTeX options (
+HO)
+)
+Package hyperref Info: Option `final' set `true' on input line 2238.
+Package hyperref Info: Hyper figures OFF on input line 2288.
+Package hyperref Info: Link nesting OFF on input line 2293.
+Package hyperref Info: Hyper index ON on input line 2296.
+Package hyperref Info: Plain pages OFF on input line 2303.
+Package hyperref Info: Backreferencing OFF on input line 2308.
 
 Implicit mode ON; LaTeX internals redefined
-Package hyperref Info: Bookmarks ON on input line 2004.
+Package hyperref Info: Bookmarks ON on input line 2444.
 (/usr/share/texmf/tex/latex/html/url.sty
 Package: url 1999/03/02  ver 1.4  Verb mode for urls, email addresses, and file
  names
 )
-LaTeX Info: Redefining \url on input line 2143.
+LaTeX Info: Redefining \url on input line 2599.
 \Fld at menulength=\count98
 \Field at Width=\dimen124
 \Fld at charsize=\dimen125
 \Choice at toks=\toks16
 \Field at toks=\toks17
-Package hyperref Info: Hyper figures OFF on input line 2618.
-Package hyperref Info: Link nesting OFF on input line 2623.
-Package hyperref Info: Hyper index ON on input line 2626.
-Package hyperref Info: backreferencing OFF on input line 2633.
-Package hyperref Info: Link coloring OFF on input line 2638.
-\c at Item=\count99
-\c at Hfootnote=\count100
+Package hyperref Info: Hyper figures OFF on input line 3102.
+Package hyperref Info: Link nesting OFF on input line 3107.
+Package hyperref Info: Hyper index ON on input line 3110.
+Package hyperref Info: backreferencing OFF on input line 3117.
+Package hyperref Info: Link coloring OFF on input line 3122.
+\Hy at abspage=\count99
+\c at Item=\count100
+\c at Hfootnote=\count101
 )
 *hyperref using driver hypertex*
 (/usr/share/texmf/tex/latex/hyperref/hypertex.def
-File: hypertex.def 2003/11/30 v6.74m Hyperref driver for HyperTeX specials
+File: hypertex.def 2007/02/07 v6.75r Hyperref driver for HyperTeX specials
 )
 (/usr/share/texmf/tex/latex/graphics/color.sty
-Package: color 1999/02/16 v1.0i Standard LaTeX Color (DPC)
+Package: color 2005/11/14 v1.0j Standard LaTeX Color (DPC)
 
-(/usr/share/texmf/tex/latex/graphics/color.cfg
-File: color.cfg 2005/02/03 v1.3 color configuration of teTeX/TeXLive
+(/usr/share/texmf/tex/latex/config/color.cfg
+File: color.cfg 2007/01/18 v1.5 color configuration of teTeX/TeXLive
 )
-Package color Info: Driver file: pdftex.def on input line 125.
+Package color Info: Driver file: pdftex.def on input line 130.
 )
 (/usr/share/texmf/tex/latex/caption/caption.sty
-Package: caption 2006/01/12 v3.0i Customising captions (AR)
+Package: caption 2007/01/07 v3.0k Customising captions (AR)
 
 (/usr/share/texmf/tex/latex/caption/caption3.sty
-Package: caption3 2006/01/12 v3.0i caption3 kernel (AR)
+Package: caption3 2007/01/07 v3.0k caption3 kernel (AR)
 \captionmargin=\dimen126
 \captionmarginx=\dimen127
 \captionwidth=\dimen128
@@ -206,14 +214,14 @@
 \captionhangindent=\dimen131
 )
 Package caption Info: hyperref package v6.74m (or newer) detected on input line
- 292.
+ 304.
 )
 (/usr/share/texmf/tex/latex/multirow/multirow.sty
 \bigstrutjot=\dimen132
 )
-(/usr/share/texmf/tex/latex/oberdiek/ifpdf.sty
-Package: ifpdf 2001/06/14 v1.0 Providing \ifpdf (HO)
-Package ifpdf Info: pdfTeX in pdf mode detected on input line 140.
+(/usr/share/texmf/tex/generic/oberdiek/ifpdf.sty
+Package: ifpdf 2006/02/20 v1.4 Provides the ifpdf switch (HO)
+Package ifpdf Info: pdfTeX in pdf mode detected.
 ) (./saga_tg08.aux)
 \openout1 = `saga_tg08.aux'.
 
@@ -231,70 +239,40 @@
 LaTeX Font Info:    ... okay on input line 51.
 LaTeX Font Info:    Checking defaults for PD1/pdf/m/n on input line 51.
 LaTeX Font Info:    ... okay on input line 51.
+Package hyperref Info: Link coloring OFF on input line 51.
 
-(/usr/share/texmf/tex/context/base/supp-pdf.tex
-(/usr/share/texmf/tex/context/base/supp-mis.tex
-loading : Context Support Macros / Miscellaneous (2004.10.26)
-\protectiondepth=\count101
-\scratchcounter=\count102
-\scratchtoks=\toks18
-\scratchdimen=\dimen133
-\scratchskip=\skip50
-\scratchmuskip=\muskip10
-\scratchbox=\box27
-\scratchread=\read1
-\scratchwrite=\write3
-\zeropoint=\dimen134
-\onepoint=\dimen135
-\onebasepoint=\dimen136
-\minusone=\count103
-\thousandpoint=\dimen137
-\onerealpoint=\dimen138
-\emptytoks=\toks19
-\nextbox=\box28
-\nextdepth=\dimen139
-\everyline=\toks20
-\!!counta=\count104
-\!!countb=\count105
-\recursecounter=\count106
+(/usr/share/texmf/tex/latex/hyperref/nameref.sty
+Package: nameref 2006/12/27 v2.28 Cross-referencing by name of section
+
+(/usr/share/texmf/tex/latex/oberdiek/refcount.sty
+Package: refcount 2006/02/20 v3.0 Data extraction from references (HO)
 )
-loading : Context Support Macros / PDF (2004.03.26)
-\nofMPsegments=\count107
-\nofMParguments=\count108
-\MPscratchCnt=\count109
-\MPscratchDim=\dimen140
-\MPnumerator=\count110
-\everyMPtoPDFconversion=\toks21
+\c at section@level=\count102
 )
-Package hyperref Info: Link coloring OFF on input line 51.
- (/usr/share/texmf/tex/latex/hyperref/nameref.sty
-Package: nameref 2003/12/03 v2.21 Cross-referencing by name of section
-\c at section@level=\count111
-)
 LaTeX Info: Redefining \ref on input line 51.
 LaTeX Info: Redefining \pageref on input line 51.
 
-(/usr/share/texmf/tex/latex/ms/ragged2e.sty
+(/usr/share/texmf/tex/latex/ragged2e/ragged2e.sty
 Package: ragged2e 2003/03/25 v2.04 ragged2e Package (MS)
 
-(/usr/share/texmf/tex/latex/ms/everysel.sty
+(/usr/share/texmf/tex/latex/everysel/everysel.sty
 Package: everysel 1999/06/08 v1.03 EverySelectfont Package (MS)
 LaTeX Info: Redefining \selectfont on input line 125.
 )
-\CenteringLeftskip=\skip51
-\RaggedLeftLeftskip=\skip52
-\RaggedRightLeftskip=\skip53
-\CenteringRightskip=\skip54
-\RaggedLeftRightskip=\skip55
-\RaggedRightRightskip=\skip56
-\CenteringParfillskip=\skip57
-\RaggedLeftParfillskip=\skip58
-\RaggedRightParfillskip=\skip59
-\JustifyingParfillskip=\skip60
-\CenteringParindent=\skip61
-\RaggedLeftParindent=\skip62
-\RaggedRightParindent=\skip63
-\JustifyingParindent=\skip64
+\CenteringLeftskip=\skip50
+\RaggedLeftLeftskip=\skip51
+\RaggedRightLeftskip=\skip52
+\CenteringRightskip=\skip53
+\RaggedLeftRightskip=\skip54
+\RaggedRightRightskip=\skip55
+\CenteringParfillskip=\skip56
+\RaggedLeftParfillskip=\skip57
+\RaggedRightParfillskip=\skip58
+\JustifyingParfillskip=\skip59
+\CenteringParindent=\skip60
+\RaggedLeftParindent=\skip61
+\RaggedRightParindent=\skip62
+\JustifyingParindent=\skip63
 )
 ** ATTENTION: \authorblockN is deprecated (line 66). Use \IEEEauthorblockN inst
 ead.
@@ -321,6 +299,8 @@
 stead.
 ** ATTENTION: \authorrefmark is deprecated (line 66). Use \IEEEauthorrefmark in
 stead.
+** ATTENTION: \authorrefmark is deprecated (line 66). Use \IEEEauthorrefmark in
+stead.
 ** ATTENTION: \authorblockA is deprecated (line 66). Use \IEEEauthorblockA inst
 ead.
 ** ATTENTION: \authorrefmark is deprecated (line 66). Use \IEEEauthorrefmark in
@@ -343,6 +323,8 @@
 stead.
 ** ATTENTION: \authorrefmark is deprecated (line 66). Use \IEEEauthorrefmark in
 stead.
+** ATTENTION: \authorrefmark is deprecated (line 66). Use \IEEEauthorrefmark in
+stead.
 ** ATTENTION: \authorblockA is deprecated (line 66). Use \IEEEauthorblockA inst
 ead.
 ** ATTENTION: \authorrefmark is deprecated (line 66). Use \IEEEauthorrefmark in
@@ -351,17 +333,19 @@
 ead.
 ** ATTENTION: \authorrefmark is deprecated (line 66). Use \IEEEauthorrefmark in
 stead.
-** ATTENTION: \keywords is deprecated (line 94). Use \IEEEkeywords instead.
+** ATTENTION: \keywords is deprecated (line 92). Use \IEEEkeywords instead.
 
-Underfull \hbox (badness 8132) in paragraph at lines 94--98
+Underfull \hbox (badness 8132) in paragraph at lines 92--96
 []\OT1/ptm/b/it/9 Index Terms\OT1/ptm/b/n/9 ---eScience Ap-pli-ca-tion, Mid-dle
 -ware Inter-
  []
 
+
+LaTeX Warning: Citation `cactusworm' on page 1 undefined on input line 173.
+
 [1
 Non-PDF special ignored!
-Non-PDF special ignored!{/usr/share/texmf-var/fonts/map/pdftex/updmap/pdftex.ma
-p}
+Non-PDF special ignored!{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}
 
 
 Non-PDF special ignored!
@@ -385,16 +369,32 @@
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
-Non-PDF special ignored!] [2
+Non-PDF special ignored!]
+Underfull \hbox (badness 10000) in paragraph at lines 227--244
+
+ []
+
+[2
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
-Non-PDF special ignored!
-Non-PDF special ignored!
 Non-PDF special ignored!]
-<./figures/3StageKalmanFilter.pdf, id=23, 672.5125pt x 327.2225pt>
+
+LaTeX Warning: Citation `LiEnKF07' on page 3 undefined on input line 400.
+
+
+LaTeX Warning: Citation `DO2007' on page 3 undefined on input line 400.
+
+
+LaTeX Warning: Citation `DO2006' on page 3 undefined on input line 400.
+
+
+Underfull \vbox (badness 10000) has occurred while \output is active []
+
+
+<./figures/3StageKalmanFilter.pdf, id=13, 672.5125pt x 327.2225pt>
 File: ./figures/3StageKalmanFilter.pdf Graphic file (type pdf)
 
 <use ./figures/3StageKalmanFilter.pdf> [3
@@ -421,8 +421,14 @@
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
 Non-PDF special ignored! <./figures/3StageKalmanFilter.pdf>]
-Underfull \hbox (badness 1478) in paragraph at lines 517--520
+Underfull \hbox (badness 1478) in paragraph at lines 520--523
 []\OT1/ptm/m/n/10 RPC pack-age - is an im-ple-men-ta-tion of the GGF
  []
 
@@ -453,10 +459,15 @@
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!]
-<./figures/ApplicationArchitecture.pdf, id=203, 725.71124pt x 496.85625pt>
+<./figures/ApplicationArchitecture.pdf, id=191, 743.77875pt x 514.92375pt>
 File: ./figures/ApplicationArchitecture.pdf Graphic file (type pdf)
 
-<use ./figures/ApplicationArchitecture.pdf> [5
+<use ./figures/ApplicationArchitecture.pdf>
+Overfull \hbox (0.88142pt too wide) in paragraph at lines 657--658
+ [] 
+ []
+
+[5
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
@@ -480,35 +491,26 @@
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
-Non-PDF special ignored!
-Non-PDF special ignored!
-Non-PDF special ignored!
-Non-PDF special ignored!
-Non-PDF special ignored!
-Non-PDF special ignored!
 Non-PDF special ignored! <./figures/ApplicationArchitecture.pdf>]
-<./figures/SequenceDiagram.pdf, id=282, 524.96124pt x 435.6275pt>
+<./figures/SequenceDiagram.pdf, id=265, 524.96124pt x 435.6275pt>
 File: ./figures/SequenceDiagram.pdf Graphic file (type pdf)
 
 <use ./figures/SequenceDiagram.pdf>
-Overfull \hbox (10.47998pt too wide) in paragraph at lines 780--781
+Overfull \hbox (10.47998pt too wide) in paragraph at lines 783--784
  [] 
  []
 
-LaTeX Font Info:    Try loading font information for OT1+pcr on input line 826.
+LaTeX Font Info:    Try loading font information for OT1+pcr on input line 828.
 
 (/usr/share/texmf/tex/latex/psnfss/ot1pcr.fd
 File: ot1pcr.fd 2001/06/04 font definitions for OT1/pcr.
 )
-<./figures/gmaps_bqp.pdf, id=283, 794.97pt x 614.295pt>
+<./figures/gmaps_bqp.pdf, id=266, 794.97pt x 614.295pt>
 File: ./figures/gmaps_bqp.pdf Graphic file (type pdf)
 
 <use ./figures/gmaps_bqp.pdf>
 LaTeX Font Info:    External font `cmex10' loaded for size
-(Font)              <9> on input line 852.
-
-Underfull \vbox (badness 10000) has occurred while \output is active []
-
+(Font)              <9> on input line 854.
  [6
 Non-PDF special ignored!
 Non-PDF special ignored!
@@ -525,12 +527,6 @@
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
-Non-PDF special ignored! <./figures/SequenceDiagram.pdf>]
-Overfull \hbox (48.0pt too wide) in paragraph at lines 876--890
-\OT1/pcr/m/n/10 http://fortytwo.cct.lsu.edu/teragrid/teragrid.html 
- []
-
-[7
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
@@ -539,18 +535,12 @@
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
+Non-PDF special ignored! <./figures/SequenceDiagram.pdf>] [7
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
-Non-PDF special ignored! <./figures/gmaps_bqp.pdf>] (./saga_tg08.bbl
-Underfull \hbox (badness 2856) in paragraph at lines 68--71
-[]\OT1/ptm/m/n/8 [Online]. Avail-able: []$http : / / www . teragridfuture . org
- / ,[]http : / / www .
- []
-
-[8
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
@@ -563,6 +553,17 @@
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
+Non-PDF special ignored! <./figures/gmaps_bqp.pdf>]
+
+LaTeX Warning: Citation `DO2007' on page 8 undefined on input line 990.
+
+(./saga_tg08.bbl
+Underfull \hbox (badness 2856) in paragraph at lines 68--71
+[]\OT1/ptm/m/n/8 [Online]. Avail-able: []$http : / / www . teragridfuture . org
+ / ,[]http : / / www .
+ []
+
+[8
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
@@ -645,25 +646,45 @@
 Non-PDF special ignored!
 Non-PDF special ignored!
 Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
+Non-PDF special ignored!
 
-] (./saga_tg08.aux) ) 
+] (./saga_tg08.aux)
+
+LaTeX Warning: There were undefined references.
+
+
+LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right.
+
+ ) 
 Here is how much of TeX's memory you used:
- 3933 strings out of 94500
- 59892 string characters out of 1176766
- 118825 words of memory out of 1000000
- 7068 multiletter control sequences out of 10000+50000
- 43693 words of font info for 83 fonts, out of 500000 for 2000
- 580 hyphenation exceptions out of 1000
- 35i,13n,38p,1093b,357s stack positions out of 1500i,500n,5000p,200000b,5000s
+ 3879 strings out of 256216
+ 60391 string characters out of 1917072
+ 121478 words of memory out of 1500000
+ 7125 multiletter control sequences out of 10000+200000
+ 45315 words of font info for 86 fonts, out of 1200000 for 2000
+ 645 hyphenation exceptions out of 8191
+ 35i,13n,38p,1093b,439s stack positions out of 5000i,500n,6000p,200000b,15000s
+{/usr/share/texmf/fonts/enc/dvips/base/8r.enc}</usr/share/texmf/fonts/type1/b
+luesky/cm/cmsy10.pfb></usr/share/texmf/fonts/type1/bluesky/cm/cmsy6.pfb></usr/s
+hare/texmf/fonts/type1/bluesky/cm/cmsy7.pfb></usr/share/texmf/fonts/type1/blues
+ky/cm/cmsy8.pfb></usr/share/texmf/fonts/type1/urw/courier/ucrr8a.pfb></usr/shar
+e/texmf/fonts/type1/urw/times/utmb8a.pfb></usr/share/texmf/fonts/type1/urw/time
+s/utmbi8a.pfb></usr/share/texmf/fonts/type1/urw/times/utmr8a.pfb></usr/share/te
+xmf/fonts/type1/urw/times/utmri8a.pfb>
+Output written on saga_tg08.pdf (9 pages, 2350949 bytes).
 PDF statistics:
- 381 PDF objects out of 300000
- 0 named destinations out of 131072
- 33 words of extra memory for PDF output out of 65536
-</usr/share/texmf/fonts/type1/bluesky/cm/cmsy6.pfb></usr/s
-hare/texmf/fonts/type1/bluesky/cm/cmsy10.pfb>{/usr/share/texmf/fonts/enc/dvips/
-psnfss/8r.enc}</usr/share/texmf/fonts/type1/urw/courier/ucrr8a.pfb></usr/share/
-texmf/fonts/type1/bluesky/cm/cmsy7.pfb></usr/share/texmf/fonts/type1/urw/times/
-utmri8a.pfb></usr/share/texmf/fonts/type1/urw/times/utmb8a.pfb></usr/share/texm
-f/fonts/type1/urw/times/utmbi8a.pfb></usr/share/texmf/fonts/type1/bluesky/cm/cm
-sy8.pfb></usr/share/texmf/fonts/type1/urw/times/utmr8a.pfb>
-Output written on saga_tg08.pdf (9 pages, 2359509 bytes).
+ 389 PDF objects out of 1000 (max. 8388607)
+ 0 named destinations out of 1000 (max. 131072)
+ 33 words of extra memory for PDF output out of 10000 (max. 10000000)
+

File [modified]: saga_tg08.pdf
Delta lines: +0 -0
===================================================================
(Binary files differ)

