[Saga-devel] saga-projects SVN commit 855: /papers/migol-philtrans08/final/

[aluckow at cct.lsu.edu]

User: aluckow
Date: 2009/01/16 02:26 PM

Modified:
 /papers/migol-philtrans08/final/
  repex_ptrsa_final.pdf, repex_ptrsa_final.tex

Log:
 Since the last commit message was bounced by the mailing list:
 Proof-read paper one more time
 Prepared camera ready version, which is accepted by Phil Trans author system
 Added summary of changes for Laura
 
 Some minor modification in spacing and introduction.
 If no one objects within the next two hours, I will submit the paper.
 Andre

File Changes:

Directory: /papers/migol-philtrans08/final/
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File [modified]: repex_ptrsa_final.pdf
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File [modified]: repex_ptrsa_final.tex
Delta lines: +10 -9
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--- papers/migol-philtrans08/final/repex_ptrsa_final.tex	2009-01-16 20:08:19 UTC (rev 854)
+++ papers/migol-philtrans08/final/repex_ptrsa_final.tex	2009-01-16 20:26:38 UTC (rev 855)
@@ -150,9 +150,10 @@
 leading to a reduction in the time-to-completion of the scientific
 problem.  The remainder of the paper is structured as follows: In the
 next section we provide the basic ideas and advantages of using RE
-simulations to understand physical properties of a RNA system. In
-section~\ref{sec:remd_impl} we describe the details of the REMD
-framework implementation. Section~\ref{sec:glidein} discusses the new BigJob
+simulations to understand physical properties of a RNA system. The REMD
+framework architecture and implementation are 
+presented in section~\ref{sec:remd_impl}. 
+Section~\ref{sec:glidein} discusses the new BigJob
 abstraction and the SAGA Glide-In framework.  
 In section 5 we describe the deployment and results of different experiments
 using the SAGA based RE framework on the TeraGrid, and in section 6 we
@@ -310,11 +311,11 @@
 
 \begin{figure}[t]
     \begin{center}  
-      \includegraphics[width=0.67\textwidth]{remdmanager_v12}
+      \includegraphics[width=0.75\textwidth]{remdmanager_v12}
       \caption{\footnotesize \bf RE-Manager Abstractions: The BigJob
           abstraction provides the capability to cluster sub-jobs into a
           larger big-job, and is implemented on top of the Glide-In
-          abstraction.\vspace*{-3em}}
+          abstraction.\vspace*{-1em}}
      \label{fig:abstractions} 
     \end{center}
 \end{figure}
@@ -338,12 +339,12 @@
 
 \begin{figure}[t]
 	    \begin{center}  
-	      \includegraphics[width=0.67\textwidth]{re_bigjob_interactions_v2}
+	      \includegraphics[width=0.75\textwidth]{re_bigjob_interactions_v2}
 	      \caption{\footnotesize \bf RE-Manager and SAGA-Glide-In Framework:
 	        The Glide-In job (Replica-Agent) is used as place-holder job
 	        for all replica sub-jobs running on a single cluster. The
-	        \remanager\ can control both the \replicaagent\ and the replica
-	        jobs.\vspace*{-1em}}
+	        \remanager\ controls both the \replicaagent\ and the replica
+	        jobs using the BigJob abstraction.\vspace*{-1em}}
 	        \label{fig:remdmanager_v1.1}   
 	    \end{center}
 \end{figure}
@@ -650,7 +651,7 @@
 \section{Conclusion and Future Work}
 
 In summary, SAGA provides a well-defined and sufficiently powerful
-interface to develop the required abstraction to support adaptive
+interface to develop the required abstractions to support adaptive
 distributed RE applications.  SAGA allows the simple decoupling
 of the RE orchestration logic from the underlying distributed
 infrastructure. The SAGA \glidein\ framework represents the first