[Bigjob-users] Reg: An issue while running a test Bigjob
pradeep kumar Mantha
pradeepm66 at gmail.com
Wed Nov 30 14:51:31 CST 2011
Hi Murali!
Could you please try to use other futuregrid machines like india or sierra
for running bigjob, as ALAMO has few problems accessing advert database
from compute nodes.
thanks
pradeep.
On Sun, Nov 27, 2011 at 12:53 PM, Muralidhar Chouhan <cmural1 at tigers.lsu.edu
> wrote:
> thanks a lot for the support.
>
> i tried to use other resources , it shows following error.
>
> "saga.bad_parameter: SAGA(BadParameter): condor_job: Adaptor supports
> 'condor' and 'condorg' URL schemes, 'pbspro' is not supported."
>
>
> On Sun, Nov 27, 2011 at 12:39 PM, pradeep kumar Mantha <
> pradeepm66 at gmail.com> wrote:
>
>> Yes everything looks fine and the job executed successfully.
>> Try using different resource urls given in the example to execute jobs
>> as per your requirement.
>>
>> Please let us know if something is not clear.
>>
>> On Sun, Nov 27, 2011 at 12:33 PM, Muralidhar Chouhan <
>> cmural1 at tigers.lsu.edu> wrote:
>>
>>> I have run the job, find the screen shot of my output.please suggest if
>>> i am still missing something.
>>>
>>>
>>> On Sun, Nov 27, 2011 at 12:19 PM, pradeep kumar Mantha <
>>> pradeepm66 at gmail.com> wrote:
>>>
>>>> Yes.
>>>> In $HOME directory just create link with name .saga.ini
>>>> ln -s $HOME/saga_adaptors/saga.ini .saga.ini
>>>>
>>>>
>>>> On Sun, Nov 27, 2011 at 12:11 PM, Muralidhar Chouhan <
>>>> cmural1 at tigers.lsu.edu> wrote:
>>>>
>>>>> I cant see it in my $HOME directory, there is no hidden file with name
>>>>> *.saga.ini (*i have used *ls -a* to see all the hidden files)
>>>>>
>>>>>
>>>>> On Sun, Nov 27, 2011 at 12:05 PM, pradeep kumar Mantha <
>>>>> pradeepm66 at gmail.com> wrote:
>>>>>
>>>>>>
>>>>>>
>>>>>> On Sun, Nov 27, 2011 at 11:45 AM, Muralidhar Chouhan <
>>>>>> cmural1 at tigers.lsu.edu> wrote:
>>>>>>
>>>>>>> I can see the file mentioned in the following path,
>>>>>>>
>>>>>>> $HOME/saga_adaptors/saga.ini
>>>>>>>
>>>>>>
>>>>>> I think you created the file in $HOME/saga_adaptors with filename
>>>>>> saga.ini
>>>>>>
>>>>>> The file should be in $HOME directory and name of the file is
>>>>>> ".saga.ini" ( .saga.ini is a hidden file and starts with "." )
>>>>>>
>>>>>>
>>>>>>
>>>>>>> i have modified the file as mentioned, however i did not change the
>>>>>>> *location, *i am not sure if i can copy paste the one that you
>>>>>>> shared, please confirm. It did not work for me. please find the attachments
>>>>>>> of my* saga.ini* file and the *source code*.
>>>>>>>
>>>>>>> (location in my file)
>>>>>>> location = ${SAGA_LOCATION:/N/soft/SAGA/saga/1.6/gcc-4.1.2}
>>>>>>>
>>>>>>> I have got below error this time,
>>>>>>>
>>>>>>> pilot_dir = saga.advert.directory(saga.url(pilot_url),
>>>>>>> saga.advert.Create | saga.advert.CreateParents | saga.advert.ReadWrite)
>>>>>>> saga.no_success: SAGA(NoSuccess): default_advert: Unable to
>>>>>>> establish connection to database_connection: dbname='advertdb' host='
>>>>>>> advert.cct.lsu.edu' password='<password>' port='8080'
>>>>>>> user='<username>' Cannot establish connection to the database: FATAL:
>>>>>>> password authentication failed for user "<username>"
>>>>>>>
>>>>>>>
>>>>>> Please use examples under tutorial section with corresponding
>>>>>> COORDINATION_URL. see FAQ 12.
>>>>>>
>>>>>>
>>>>>>
>>>>>>>
>>>>>>> Thanks & Regards,
>>>>>>> Muralidhar Chouhan
>>>>>>>
>>>>>>>
>>>>>>> On Sun, Nov 27, 2011 at 10:08 AM, pradeep kumar Mantha <
>>>>>>> pradeepm66 at gmail.com> wrote:
>>>>>>>
>>>>>>>> Currently!
>>>>>>>>
>>>>>>>> test-bigjob doesn't work on alamo since SAGA CSA installation was
>>>>>>>> not built with default sqlite3 database. So please use examples under
>>>>>>>> tutorial tab on bigjob page.
>>>>>>>>
>>>>>>>>
>>>>>>>>
>>>>>>>> Could you please try to use advert.cct.lsu.edu as hostname & 8080
>>>>>>>> as port.
>>>>>>>>
>>>>>>>>
>>>>>>>> Note:
>>>>>>>>
>>>>>>>> Make sure you have file $HOME/.saga.ini
>>>>>>>> with content
>>>>>>>>
>>>>>>>>
>>>>>>>> [saga]
>>>>>>>> # saga install root, points to what is set in the environment, as
>>>>>>>> # SAGA_LOCATION, or use the configure time prefix as fallback.
>>>>>>>> location = ${SAGA_LOCATION:/var/tmp/saga-1.4.1_python2.6.4}
>>>>>>>>
>>>>>>>> # where to find adaptor ini files
>>>>>>>> ini_path = ${HOME}/saga_adaptors/
>>>>>>>>
>>>>>>>>
>>>>>>>> Hope it works.
>>>>>>>>
>>>>>>>> thanks
>>>>>>>> pradeep
>>>>>>>>
>>>>>>>>
>>>>>>>> On Sun, Nov 27, 2011 at 12:11 AM, Muralidhar Chouhan <
>>>>>>>> cmural1 at tigers.lsu.edu> wrote:
>>>>>>>>
>>>>>>>>> Dear Pradeep,
>>>>>>>>>
>>>>>>>>> I have tried the fix mentioned in the website, even then it gives
>>>>>>>>> me same error. Please confirm if the *host *parameter in the
>>>>>>>>> below line needs to be unchanged? please find the attachment of my
>>>>>>>>> *saga_adaptor_default_advert.ini *file.
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> dbconnect = dbname=advertdb;host=<your hostname here>;port=5432;user=SAGA;password=SAGA_client
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> *Regards,*
>>>>>>>>> Muralidhar Chouhan
>>>>>>>>>
>>>>>>>>>
>>>>>>>>> On Sat, Nov 26, 2011 at 11:31 PM, Ole Weidner <
>>>>>>>>> oweidner at cct.lsu.edu> wrote:
>>>>>>>>>
>>>>>>>>>> Hi,
>>>>>>>>>>
>>>>>>>>>> I don't see how http://faust.cct.lsu.edu/trac/bigjob/wiki/cewould help in this case. Frankly, I don't understand the "fix" at all.
>>>>>>>>>> There's no explanatio. Also, please note the subtile difference between
>>>>>>>>>> Muralidhar's problem:
>>>>>>>>>>
>>>>>>>>>> Unable to establish connection to database_connection:
>>>>>>>>>> dbname='advertdb' host='*localhost*' password='<password>' port='
>>>>>>>>>> *5432*' user='<username>'
>>>>>>>>>>
>>>>>>>>>> and the one in the FAQ section:
>>>>>>>>>>
>>>>>>>>>> Unable to establish connection to database_connection:
>>>>>>>>>> dbname='advertdb' host='*advert.cct.lsu.edu*'
>>>>>>>>>> password='<password>' port='*8080*' user='<username>'
>>>>>>>>>>
>>>>>>>>>> IMHO the role of the advert service is not made very clear in the
>>>>>>>>>> BigJob documentation and could easily become a stumbling block for the
>>>>>>>>>> casual BigJob user without any SAGA experience. In general, I think that
>>>>>>>>>> this needs to be addressed one way (replacing advert with something else)
>>>>>>>>>> or the other (make it more transparent to the user) in order to make BigJob
>>>>>>>>>> more user-friendly. I think the '*legendary*' HECToR project
>>>>>>>>>> made the same suggestion a while ago ;-)
>>>>>>>>>>
>>>>>>>>>> Cheers,
>>>>>>>>>> Ole
>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>> On Nov 26, 2011, at 10:52 PM, pradeep kumar Mantha wrote:
>>>>>>>>>>
>>>>>>>>>> Hi!
>>>>>>>>>>
>>>>>>>>>> Please find the solution at FAQ's & mailing list->common errors
>>>>>>>>>> on bigjob [ http://faust.cct.lsu.edu/trac/bigjob/] website.
>>>>>>>>>>
>>>>>>>>>> Please let me know if it doesn't work.
>>>>>>>>>>
>>>>>>>>>> thanks
>>>>>>>>>> pradeep
>>>>>>>>>>
>>>>>>>>>> On Sat, Nov 26, 2011 at 9:38 PM, Muralidhar Chouhan <
>>>>>>>>>> cmural1 at tigers.lsu.edu> wrote:
>>>>>>>>>>
>>>>>>>>>>> Dear bigjob-users,
>>>>>>>>>>>
>>>>>>>>>>> I have installed the Bigjob on Futuregrid (alamo), but i am
>>>>>>>>>>> facing issues while running any test jobs on the machine. I have tested the
>>>>>>>>>>> successful installation of SAGA and Bigjob by running the following two
>>>>>>>>>>> lines in the python shell.
>>>>>>>>>>>
>>>>>>>>>>> import saga
>>>>>>>>>>> import bigjob
>>>>>>>>>>>
>>>>>>>>>>> There is a *test-bigjob *mentioned in the installation guide, i
>>>>>>>>>>> tried to run the same. It shows following error.
>>>>>>>>>>>
>>>>>>>>>>> "pilot_dir = saga.advert.directory(saga.url(pilot_url),
>>>>>>>>>>> saga.advert.Create | saga.advert.CreateParents | saga.advert.ReadWrite)
>>>>>>>>>>> saga.no_success: SAGA(NoSuccess): default_advert: Unable to
>>>>>>>>>>> establish connection to database_connection: dbname='advertdb'
>>>>>>>>>>> host='localhost' password='<password>' port='5432' user='<username>' Cannot
>>>>>>>>>>> establish connection to the database: could not connect to server:
>>>>>>>>>>> Connection refused
>>>>>>>>>>> Is the server running on host "localhost" and accepting
>>>>>>>>>>> TCP/IP connections on port 5432?"
>>>>>>>>>>>
>>>>>>>>>>> Please find the attachment of the text file containing the
>>>>>>>>>>> entire error output.please help.
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>>> *Sincerely,*
>>>>>>>>>>> Muralidhar Chouhan
>>>>>>>>>>>
>>>>>>>>>>> _______________________________________________
>>>>>>>>>>> Bigjob-users mailing list
>>>>>>>>>>> Bigjob-users at mail.cct.lsu.edu
>>>>>>>>>>> https://mail.cct.lsu.edu/mailman/listinfo/bigjob-users
>>>>>>>>>>>
>>>>>>>>>>>
>>>>>>>>>> _______________________________________________
>>>>>>>>>> Bigjob-users mailing list
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>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>>
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>>>>>>>>>>
>>>>>>>>>>
>>>>>>>>>
>>>>>>>>> _______________________________________________
>>>>>>>>> Bigjob-users mailing list
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>>>>>>>>>
>>>>>>>>>
>>>>>>>>
>>>>>>>
>>>>>>
>>>>>
>>>>
>>>
>>
>
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