[Bigjob-users] Steps to be followed when there is a problem with globus on LONI.

[Ryky Nelson]

Hi Pradeep,

I've tried your suggestion. Yes it worked but it stayed in queue forever. Do
you think there is something I missed?

Best,
Ryky


On Tue, Oct 4, 2011 at 5:36 PM, pradeep kumar Mantha <pmanth2 at cct.lsu.edu>wrote:

> Hi Ryky/Brandon!
>
> With problems with globus certificate, you can't use globus adaptors. Here
> is a work around for that.
> But you can't do remote job submission with pbspro adaptors. So this would
> be helpful to run jobs using pilot job on single machine.
>
>
>
> In the example files change the lrms_url from gram to pbspro. Should look
> like this
>
> *# lrms_url = "gram://eric1.loni.org/jobmanager-pbs" # globus resource url
> used when globus is used. (LONI)*
> *lrms_url = "pbspro://localhost" # pbspro resource url used when pbspro
> scheduling system is used.(Futuregrid or LSU Machines)*
> *
> *
> *set the value of number_of_processes to number of nodes you want to
> request.*
> * *
> *number_of_processes = 1 ( the value should be number of nodes not total
> number of cores in this case )*
>
> Next step would be to install pbspro adaptors. The adaptors will be
> installed by default after SAGA 1.6 release.
>
> *cd $HOME*
> *mkdir pbspro_adaptors*
> *svn co https://svn.cct.lsu.edu/repos/saga-adaptors/pbspro/trunk/pbspro_trunk
> *
> *cd pbspro_trunk*
> *./configure*
> *make*
> *env DESTDIR=$HOME/pbspro_adaptors make install*
>
>
> pbspro adaptors successfully installed.
>
>
> Next step is to configure pbspro adaptors.
>
> Create .saga.ini file in $HOME directory.
>
> *vi .saga.ini*
>
> Paste the below text in the above file(Edit your account as shown below).
>
> *[saga]*
> *  # saga install root,  points to what is set in the environment, as*
> *  # SAGA_LOCATION, or use the configure time prefix as fallback.*
> *  location = ${SAGA_LOCATION:/var/tmp/saga-1.5.3_python2.6.4}*
> *
> *
> *  # where to find adaptor ini files*
> *  ini_path = ${HOME}/saga_adaptors/*
> *
> *
> *
> *
> *[saga.adaptors.pbspro_job]*
> * name      = pbspro_job*
> *############# Edit below path and provide your account name
> ##############################*
> * path      = /home/**pmantha**
> /pbspro_adaptors/usr/local/packages/saga/1.5.3/gcc-4.3.2/lib*
> *#########################################################################
> *
> * enabled   = true*
> *
> *
> *[saga.adaptors.pbspro_job.cli]*
> * #binary_path = $[pbspro_location]/bin/*
> * binary_path = /usr/local/bin/*
>
>
> Please let me know if it still doesn't work.
> thanks
> pradeep
>
>
>
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