[Bigjob-users] Steps to be followed when there is a problem with globus on LONI.

[pradeep kumar Mantha]

Hi!

  I think it is successfully submitted to queue and is waiting for resources
in queue. So just try to reduce the number of resources/wall time requested
and re-try.
it should work.

thanks
pradeep

On Wed, Oct 5, 2011 at 7:42 AM, Ryky Nelson <rnels12 at tigers.lsu.edu> wrote:

> Hi Pradeep,
>
> I've tried your suggestion. Yes it worked but it stayed in queue forever.
> Do you think there is something I missed?
>
> Best,
> Ryky
>
>
> On Tue, Oct 4, 2011 at 5:36 PM, pradeep kumar Mantha <pmanth2 at cct.lsu.edu>wrote:
>
>> Hi Ryky/Brandon!
>>
>> With problems with globus certificate, you can't use globus adaptors. Here
>> is a work around for that.
>> But you can't do remote job submission with pbspro adaptors. So this would
>> be helpful to run jobs using pilot job on single machine.
>>
>>
>>
>> In the example files change the lrms_url from gram to pbspro. Should look
>> like this
>>
>> *# lrms_url = "gram://eric1.loni.org/jobmanager-pbs" # globus resource
>> url used when globus is used. (LONI)*
>> *lrms_url = "pbspro://localhost" # pbspro resource url used when pbspro
>> scheduling system is used.(Futuregrid or LSU Machines)*
>> *
>> *
>> *set the value of number_of_processes to number of nodes you want to
>> request.*
>> * *
>> *number_of_processes = 1 ( the value should be number of nodes not total
>> number of cores in this case )*
>>
>> Next step would be to install pbspro adaptors. The adaptors will be
>> installed by default after SAGA 1.6 release.
>>
>> *cd $HOME*
>> *mkdir pbspro_adaptors*
>> *svn co https://svn.cct.lsu.edu/repos/saga-adaptors/pbspro/trunk/pbspro_trunk
>> *
>> *cd pbspro_trunk*
>> *./configure*
>> *make*
>> *env DESTDIR=$HOME/pbspro_adaptors make install*
>>
>>
>> pbspro adaptors successfully installed.
>>
>>
>> Next step is to configure pbspro adaptors.
>>
>> Create .saga.ini file in $HOME directory.
>>
>> *vi .saga.ini*
>>
>> Paste the below text in the above file(Edit your account as shown below).
>>
>> *[saga]*
>> *  # saga install root,  points to what is set in the environment, as*
>> *  # SAGA_LOCATION, or use the configure time prefix as fallback.*
>> *  location = ${SAGA_LOCATION:/var/tmp/saga-1.5.3_python2.6.4}*
>> *
>> *
>> *  # where to find adaptor ini files*
>> *  ini_path = ${HOME}/saga_adaptors/*
>> *
>> *
>> *
>> *
>> *[saga.adaptors.pbspro_job]*
>> * name      = pbspro_job*
>> *############# Edit below path and provide your account name
>> ##############################*
>> * path      = /home/**pmantha**
>> /pbspro_adaptors/usr/local/packages/saga/1.5.3/gcc-4.3.2/lib*
>> *
>> #########################################################################
>> *
>> * enabled   = true*
>> *
>> *
>> *[saga.adaptors.pbspro_job.cli]*
>> * #binary_path = $[pbspro_location]/bin/*
>> * binary_path = /usr/local/bin/*
>>
>>
>> Please let me know if it still doesn't work.
>> thanks
>> pradeep
>>
>>
>>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: http://mail.cct.lsu.edu/pipermail/bigjob-users/attachments/20111005/6d8eba9e/attachment-0001.html