[Bigjob-users] Steps to be followed when there is a problem with globus on LONI.

[pradeep kumar Mantha]

Hi!

I observed that for pbspro adaptors, BigJob interprets the value mentioned
for walltime as seconds.
so walltime=61 means you are requesting 1minute 1 second

thanks
pradeep

On Wed, Oct 5, 2011 at 8:40 AM, pradeep kumar Mantha
<pradeepm66 at gmail.com>wrote:

> Hi!
>
>   I think it is successfully submitted to queue and is waiting for
> resources in queue. So just try to reduce the number of resources/wall time
> requested and re-try.
> it should work.
>
> thanks
> pradeep
>
>
> On Wed, Oct 5, 2011 at 7:42 AM, Ryky Nelson <rnels12 at tigers.lsu.edu>wrote:
>
>> Hi Pradeep,
>>
>> I've tried your suggestion. Yes it worked but it stayed in queue forever.
>> Do you think there is something I missed?
>>
>> Best,
>> Ryky
>>
>>
>> On Tue, Oct 4, 2011 at 5:36 PM, pradeep kumar Mantha <pmanth2 at cct.lsu.edu
>> > wrote:
>>
>>> Hi Ryky/Brandon!
>>>
>>> With problems with globus certificate, you can't use globus adaptors.
>>> Here is a work around for that.
>>> But you can't do remote job submission with pbspro adaptors. So this
>>> would be helpful to run jobs using pilot job on single machine.
>>>
>>>
>>>
>>> In the example files change the lrms_url from gram to pbspro. Should look
>>> like this
>>>
>>> *# lrms_url = "gram://eric1.loni.org/jobmanager-pbs" # globus resource
>>> url used when globus is used. (LONI)*
>>> *lrms_url = "pbspro://localhost" # pbspro resource url used when pbspro
>>> scheduling system is used.(Futuregrid or LSU Machines)*
>>> *
>>> *
>>> *set the value of number_of_processes to number of nodes you want to
>>> request.*
>>> * *
>>> *number_of_processes = 1 ( the value should be number of nodes not total
>>> number of cores in this case )*
>>>
>>> Next step would be to install pbspro adaptors. The adaptors will be
>>> installed by default after SAGA 1.6 release.
>>>
>>> *cd $HOME*
>>> *mkdir pbspro_adaptors*
>>> *svn co https://svn.cct.lsu.edu/repos/saga-adaptors/pbspro/trunk/pbspro_trunk
>>> *
>>> *cd pbspro_trunk*
>>> *./configure*
>>> *make*
>>> *env DESTDIR=$HOME/pbspro_adaptors make install*
>>>
>>>
>>> pbspro adaptors successfully installed.
>>>
>>>
>>> Next step is to configure pbspro adaptors.
>>>
>>> Create .saga.ini file in $HOME directory.
>>>
>>> *vi .saga.ini*
>>>
>>> Paste the below text in the above file(Edit your account as shown below).
>>>
>>> *[saga]*
>>> *  # saga install root,  points to what is set in the environment, as*
>>> *  # SAGA_LOCATION, or use the configure time prefix as fallback.*
>>> *  location = ${SAGA_LOCATION:/var/tmp/saga-1.5.3_python2.6.4}*
>>> *
>>> *
>>> *  # where to find adaptor ini files*
>>> *  ini_path = ${HOME}/saga_adaptors/*
>>> *
>>> *
>>> *
>>> *
>>> *[saga.adaptors.pbspro_job]*
>>> * name      = pbspro_job*
>>> *############# Edit below path and provide your account name
>>> ##############################*
>>> * path      = /home/**pmantha**
>>> /pbspro_adaptors/usr/local/packages/saga/1.5.3/gcc-4.3.2/lib*
>>> *
>>> #########################################################################
>>> *
>>> * enabled   = true*
>>> *
>>> *
>>> *[saga.adaptors.pbspro_job.cli]*
>>> * #binary_path = $[pbspro_location]/bin/*
>>> * binary_path = /usr/local/bin/*
>>>
>>>
>>> Please let me know if it still doesn't work.
>>> thanks
>>> pradeep
>>>
>>>
>>>
>>
>
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