[Bigjob-users] bigjob on teragrid/xsede

[Yaakoub El Khamra]

python bigjob-bootstrap.py $WORK/ECSS/bigjob_install

       Traceback (most recent call last):
  File "bigjob-bootstrap.py", line 23, in ?
    import subprocess
ImportError: No module named subprocess

SAGA on ranger was compiled with python 2.3.4, the system python. Andre M,
j'accuse!

You have to load the python module to get bigjob. This can be better
coordinated IMHO.

Regards
Yaakoub El Khamra



On Wed, Jan 4, 2012 at 3:22 PM, Andre Luckow <aluckow at cct.lsu.edu> wrote:

> Hi Yaakoub,
> the bootstrap script in variant c) installs virtualenv automatically
> for the user. Option d) should work. We just migrated to Github
> yesterday - so there might be some issues. Not sure why your git
> version doesn't accept the Github certificate. But, you can also clone
> the repository via HTTP.
>
> git clone http://github.com/drelu/BigJob.git
>
> or the native git protocol
>
> git clone git://github.com/drelu/BigJob.git
>
> Or alternatively, the good old SVN.
>
> I think we have many options to install BJ (maybe to many for a normal
> user). I personally prefer the virtualenv alternative since this is a
> clean way to manage all your Python libraries in user space.
>
> Best,
> Andre
>
>
> On Wed, Jan 4, 2012 at 10:02 PM, Yaakoub El Khamra <yelkhamra at gmail.com>
> wrote:
> >
> > Also can I point out something I should have pointed out a while ago:
> > users have to install virtualenv on almost all supercomputers. At least
> the
> > top 5 on XSEDE, all the ones we have allocations on.
> >
> > This means, users have to install virtualenv to install bigjob. That's
> not
> > practical. d) is what most users will want to use since they already
> have to
> > add to the pythonpath from the saga installation.
> >
> > Regards
> > Yaakoub El Khamra
> >
> >
> >
> >
> > On Wed, Jan 4, 2012 at 2:39 PM, Yaakoub El Khamra <yelkhamra at gmail.com>
> > wrote:
> >>
> >> Cloning into BigJob...
> >> error: SSL certificate problem, verify that the CA cert is OK. Details:
> >> error:14090086:SSL routines:SSL3_GET_SERVER_CERTIFICATE:certificate
> verify
> >> failed while accessing https://github.com/drelu/BigJob.git/info/refs
> >>
> >> fatal: HTTP request failed
> >>
> >> Regards
> >> Yaakoub El Khamra
> >>
> >>
> >>
> >>
> >> On Wed, Jan 4, 2012 at 2:33 PM, Andre Luckow <aluckow at cct.lsu.edu>
> wrote:
> >>>
> >>> Hi Yaakoub,
> >>> with what error does d) fail for you?
> >>>
> >>> Best,
> >>> Andre
> >>>
> >>> On Wed, Jan 4, 2012 at 9:18 PM, Yaakoub El Khamra <yelkhamra at gmail.com
> >
> >>> wrote:
> >>> >
> >>> > FYI d installation method fails. Sorry I should have told you guys
> >>> > about
> >>> > this a very long time ago when I first discovered it.
> >>> >
> >>> > Regards
> >>> > Yaakoub El Khamra
> >>> >
> >>> >
> >>> >
> >>> >
> >>> > On Wed, Jan 4, 2012 at 3:03 AM, Andre Luckow <aluckow at cct.lsu.edu>
> >>> > wrote:
> >>> >>
> >>> >> Hi Melissa,
> >>> >> the recommended way is to install BJ in user space. The CSA BJ
> version
> >>> >> is a bit outdated and is already known to have a couple of bugs:
> >>> >>
> >>> >> http://faust.cct.lsu.edu/trac/bigjob/wiki/install
> >>> >>
> >>> >> Installation type b or c should be the best for you.
> >>> >>
> >>> >> Once you have setup your virtualenv, you can easily update to a new
> >>> >> version of BJ with:
> >>> >>
> >>> >> easy_install -U bigjob
> >>> >>
> >>> >> Since, I expect that we will discover some bugs on the way to XSEDE,
> >>> >> this will be an important feature.
> >>> >>
> >>> >> Best,
> >>> >> Andre
> >>> >>
> >>> >> On Wed, Jan 4, 2012 at 4:24 AM, Melissa Romanus
> >>> >> <melissa.romanus at rutgers.edu> wrote:
> >>> >> > Hi all-
> >>> >> >
> >>> >> > I need to start either compiling information or playing around
> with
> >>> >> > bigjob
> >>> >> > on xsede/teragrid, specifically kraken, ranger, and possibly
> >>> >> > lonestar.
> >>> >> > Last
> >>> >> > semester, I was only working on the futuregrid. What documentation
> >>> >> > currently
> >>> >> > exists for getting bj running on the XSEDE machines? Also, I am
> >>> >> > sorry I
> >>> >> > have
> >>> >> > not been super up on email traffic, but what is the general
> >>> >> > consensus of
> >>> >> > 'how to use bj now' (in other words, install into user space vs
> >>> >> > CSA)? I
> >>> >> > am
> >>> >> > asking because I will soon be working closely with the chemists
> and
> >>> >> > want
> >>> >> > to
> >>> >> > have an easy/smooth process for them to follow.
> >>> >> >
> >>> >> > Thank you,
> >>> >> > Melissa
> >>> >> >
> >>> >> > _______________________________________________
> >>> >> > Bigjob-users mailing list
> >>> >> > Bigjob-users at mail.cct.lsu.edu
> >>> >> > https://mail.cct.lsu.edu/mailman/listinfo/bigjob-users
> >>> >> >
> >>> >> _______________________________________________
> >>> >> Bigjob-users mailing list
> >>> >> Bigjob-users at mail.cct.lsu.edu
> >>> >> https://mail.cct.lsu.edu/mailman/listinfo/bigjob-users
> >>> >
> >>> >
> >>
> >>
> >
>
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